h = Hom(f,g,t)The maps $f : C \to D$ and $g : E \to F$ of ZZ/d-graded factorizations induces the map $h = Hom(f,g) : Hom(D,E) \to Hom(C,F)$ defined by $\phi \mapsto g \phi f$. When the period of a factorization is greater than $2$, one should adjoin a root of unity in order for the Hom factorization to be defined.
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If one instead wants to define a new factorization over the same ambient ring, use the tensor product instead.
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The homomorphism and homomorphism' commands are also implemented for factorizations of longer length, as well as randomFactorizationMap.
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If either of the arguments is a ZZdFactorization, that argument is understood to be the identity map on the factorization.
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The source of this document is in MatrixFactorizations/MatrixFactorizationsDOC.m2:3447:0.