Some factorizations come with canonical maps. To access the factorization map, one uses inducedMap(ZZdFactorization,ZZdFactorization).
The method randomFactorizationMap(ZZdFactorization,ZZdFactorization) allows one to construct random factorization maps, random morphisms between factorizations, and random null homotopies between factorizations.
The source of this document is in MatrixFactorizations/MatrixFactorizationsDOC.m2:353:0.