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nSiteDistributiveModification -- A motif for purely distributive phosphorylation

Description

This motif creates a network for an N-site distributive phosphorylation system.

i1 : nSiteDistributiveModification 5

o1 = X_1+X_3-->X_9
     X_9-->X_1+X_3
     X_9-->X_1+X_4
     X_1+X_4-->X_10
     X_10-->X_1+X_4
     X_10-->X_1+X_5
     X_1+X_5-->X_11
     X_11-->X_1+X_5
     X_11-->X_1+X_6
     X_1+X_6-->X_12
     X_12-->X_1+X_6
     X_12-->X_1+X_7
     X_1+X_7-->X_13
     X_13-->X_1+X_7
     X_13-->X_1+X_8
     X_2+X_4-->X_14
     X_14-->X_2+X_4
     X_14-->X_2+X_3
     X_2+X_5-->X_15
     X_15-->X_2+X_4
     X_15-->X_2+X_5
     X_2+X_6-->X_16
     X_16-->X_2+X_5
     X_16-->X_2+X_6
     X_2+X_7-->X_17
     X_17-->X_2+X_6
     X_17-->X_2+X_7
     X_2+X_8-->X_18
     X_18-->X_2+X_7
     X_18-->X_2+X_8

o1 : ReactionNetwork

To rename species, use substitute(ReactionNetwork,List).

Ways to use nSiteDistributiveModification:

  • nSiteDistributiveModification(ZZ)

For the programmer

The object nSiteDistributiveModification is a method function.

The source of this document is in ReactionNetworks/nSiteDistributiveModification.m2:15:0.