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nSiteSequestration -- A motif for sequestration networks

Description

This motif creates a network for an N-site sequestration system. The synthesis reaction is created such that the network has toric steady states.

i1 : nSiteSequestration 5

o1 = X_1+X_2-->
     X_2+X_3-->
     X_3+X_4-->
     X_4+X_5-->
     X_1-->X_5

o1 : ReactionNetwork

To rename species, use substitute(ReactionNetwork,List).

Ways to use nSiteSequestration:

  • nSiteSequestration(ZZ)

For the programmer

The object nSiteSequestration is a method function.

The source of this document is in ReactionNetworks/nSiteSequestration.m2:16:0.