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twoLayerCascadeL -- an example for chemical reaction motif

Description

A combination of OnesiteModificationC and TwositeModificationF.

i1 : twoLayerCascadeL()

o1 = S_0+E-->X_1
     X_1-->S_0+E
     X_1-->E+S_1
     S_1+P_0-->X_2
     X_2-->S_1+P_0
     X_2-->S_1+P_1
     E+P_0-->X_3
     X_3-->E+P_0
     X_3-->E+P_1
     S_1+F_1-->Y_1
     Y_1-->S_1+F_1
     Y_1-->S_0+F_1
     P_1+F_2-->Y_2
     Y_2-->P_1+F_2
     Y_2-->P_0+F_2

o1 : ReactionNetwork

To rename species, use substitute(ReactionNetwork,List).

Ways to use twoLayerCascadeL:

For the programmer

The object twoLayerCascadeL is a method function.