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Basic types (such as Point and WitnessSet) are defined in the package NAGtypes.
Version 1.4 of this package was accepted for publication in volume 3 of The Journal of Software for Algebra and Geometry: Macaulay2 on 2011-05-20, in the article Numerical Algebraic Geometry (DOI: 10.2140/jsag.2011.3.5). That version can be obtained from the journal or from the Macaulay2 source code repository.
This documentation describes version 1.24 of NumericalAlgebraicGeometry.
The source code from which this documentation is derived is in the file NumericalAlgebraicGeometry.m2. The auxiliary files accompanying it are in the directory NumericalAlgebraicGeometry/.
The object NumericalAlgebraicGeometry is a package.